Preheat your oven to 425°F (220°C).
Toss the butternut squash cubes with 1 tablespoon olive oil, cumin, salt, and pepper.
Spread the cubes in a single layer on the air fryer basket or on a baking sheet lined with parchment paper.
Roast for 15-20 minutes, or until tender and slightly browned.
Heat the remaining 1 tablespoon olive oil in a large skillet over medium heat.
Add the sliced onions and cook, stirring occasionally, until they soften and become golden brown. This may take 15-20 minutes.
On a lightly floured surface, roll out the dough into a large circle or rectangle.
Place the pizza dough on a baking sheet lined with parchment paper.
Spread the goat cheese and cheddar cheese evenly over the dough, leaving a small border.
Top with the roasted butternut squash and caramelized onions.
Drizzle with honey and season with salt and pepper.
Bake the pizza for 15-20 minutes on 425, or until the crust is golden brown and the cheese is bubbly.
Top the pizza with pepitas and microgreens.
Slice and serve immediately.